Problem reading segments from HDF5 group
Created by: areeda
I'm working on a single HDF5 file with segments and triggers in a single file. When reading he segetts wih
infile = '/data/t/testtrig1.h5'
inf = h5py.File(infile, 'r')
segpth - '/segments/L1:Manual:1'
seg = DataQualityFlag.read(inf, path=segpth, verbose=True, format='hdf5')
Produces error (Python 3):
Traceback (most recent call last):
File "/Users/areeda/ligo/python/Learn/hdf5/bin/sgFind.py", line 72, in <module>
seg = DataQualityFlag.read(inf, path=segpth, verbose=True, format='hdf5')
File "/Users/areeda/miniconda2/envs/ligo-py36/lib/python3.6/site-packages/gwpy/segments/flag.py", line 635, in read
return io_read_multi(combiner, cls, source, *args, **kwargs)
File "/Users/areeda/miniconda2/envs/ligo-py36/lib/python3.6/site-packages/gwpy/io/mp.py", line 96, in read_multi
nproc, _read_single_file, files, verbose=verbose, unit='files')
File "/Users/areeda/miniconda2/envs/ligo-py36/lib/python3.6/site-packages/gwpy/utils/mp.py", line 132, in multiprocess_with_queues
return list(map(_inner, inputs))
File "/Users/areeda/miniconda2/envs/ligo-py36/lib/python3.6/site-packages/gwpy/utils/mp.py", line 119, in _inner
return func(x)
File "/Users/areeda/miniconda2/envs/ligo-py36/lib/python3.6/site-packages/gwpy/io/mp.py", line 81, in _read_single_file
return fobj, io_read(cls, fobj, *args, **kwargs)
File "/Users/areeda/miniconda2/envs/ligo-py36/lib/python3.6/site-packages/astropy/io/registry.py", line 517, in read
data = reader(*args, **kwargs)
File "/Users/areeda/miniconda2/envs/ligo-py36/lib/python3.6/site-packages/gwpy/io/hdf5.py", line 60, in decorated_func
return func(fobj, *args, **kwargs)
File "/Users/areeda/miniconda2/envs/ligo-py36/lib/python3.6/site-packages/gwpy/segments/io/hdf5.py", line 151, in read_hdf5_flag
return DataQualityFlag(active=active, known=known, **dict(dataset.attrs))
File "/Users/areeda/miniconda2/envs/ligo-py36/lib/python3.6/site-packages/gwpy/segments/flag.py", line 149, in __init__
self.name = name
File "/Users/areeda/miniconda2/envs/ligo-py36/lib/python3.6/site-packages/gwpy/segments/flag.py", line 175, in name
self._parse_name(name)
File "/Users/areeda/miniconda2/envs/ligo-py36/lib/python3.6/site-packages/gwpy/segments/flag.py", line 943, in _parse_name
elif re_IFO_TAG_VERSION.match(name):
TypeError: cannot use a string pattern on a bytes-like object
I seems like gwpy/segments/flag.py line 943
elif re_IFO_TAG_VERSION.match(name):
is being passed a name=b'L1:Manual:1' rater than a str